Information for 4-ACAGTGTCCATGTCAG (Motif 12)

C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C T G A A T G C G T C A C G A T A C T G A C T G C G T A G T A C C G T A A G T C G C A T A C T G C G A T
p-value:1e-9
log p-value:-2.163e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 6.4bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACAGTGTCCATGTCAG
NTNNCGTATCCAAGTNN-
 A C G T A C G T C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG
--GGTTGCCATGGCAA
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG
--NGTTGCCATGGCAA
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:ACAGTGTCCATGTCAG
---------NTGTCAN
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG-
-CGGTTGCCATGGCAAC
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.54
Offset:10
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG--
----------TGTCANYT
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ACAGTGTCCATGTCAG
--BNTGDCCTTG----
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:ACAGTGTCCATGTCAG--
--------VBTGWCAGCB
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG
--ATTTTCCATT----
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G
A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ACAGTGTCCATGTCAG--
---GTTGCCATGGCAACM
 C G T A A G T C C G T A A C T G A C G T A C T G A C G T A G T C A G T C C G T A A C G T A T C G A G C T A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C