Information for 6-TTTTAAAAGT (Motif 12)

C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
Reverse Opposite:
G T C A A T G C C G A T C G A T C A G T A C G T C T G A T G C A C G T A G C T A
p-value:1e-7
log p-value:-1.829e+01
Information Content per bp:1.648
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif9.25%
Number of Background Sequences with motif2223.7
Percentage of Background Sequences with motif4.69%
Average Position of motif in Targets49.9 +/- 27.5bp
Average Position of motif in Background48.2 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAGT
CGGTTTCAAA---
 A C G T A C G T A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAGT
TTTTATKRGG
 C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAAGT
TTTTATTRGN
 C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAGT
NATTCAAAT--
 A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAGT
NTTTTACGAGN
 A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAAGT---
NAATTTTACGAGNTNN
 A C G T A C G T A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAAGT---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAAAAGT
GNCTATAAAAGG
 A C G T A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAGT
NTTTTATTGG-
 A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTTTAAAAGT--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T C G A T G C A T A C G T G A C T T G C A G T C A G C T A G C T A T A C G C A G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G