Information for 6-CAGCCTTGCAAAC (Motif 9)

A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
Reverse Opposite:
A C T G A C G T A C G T A C G T A T C G A G T C G T C A C G T A A C T G A C T G A G T C A C G T A C T G
p-value:1e-11
log p-value:-2.536e+01
Information Content per bp:1.895
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.4 +/- 25.8bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGCCTTGCAAAC
CAGCC--------
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTGCAAAC
BCAGACWA------
 A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGCCTTGCAAAC-
TTGCCATGGCAACN
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTTGCAAAC
GTTGCCATGGCAAC
 A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CAGCCTTGCAAAC
----CTTGGCAA-
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGCCTTGCAAAC-
TTGCCATGGCAACC
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CAGCCTTGCAAAC
---CSTGGGAAAD
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTTGCAAAC
CACAGN---------
 A C G T A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGCCTTGCAAAC
-WDNCTGGGCA--
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CAGCCTTGCAAAC-
----GGTGCCAAGT
 A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T G C G T C A C G T A C G T A G T A C A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T