Information for 7-ACATAAAGCA (Motif 9)

G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
Reverse Opposite:
A C G T T C A G A T G C A C G T A C G T G C A T C T G A C G A T A C T G C A G T
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.836
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif169.1
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets43.5 +/- 22.9bp
Average Position of motif in Background49.8 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ACATAAAGCA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ACATAAAGCA
GCCATAAATCA
 A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACATAAAGCA
NGYCATAAAWCH
 A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACATAAAGCA
GGCCATAAATCA
 A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACATAAAGCA
GGCCATAAATCA
 A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ACATAAAGCA-
GGCCATAAATCAC
 A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACATAAAGCA
TCATCAATCA
 G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACATAAAGCA
AAGCCATAAAA--
 A C G T A C G T A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACATAAAGCA
GCAATAAAA--
 A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACATAAAGCA
GTCATAAAAN-
 A C G T G T C A G T A C C G T A A G C T C G T A C G T A C G T A A T C G A G T C C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T