Information for 3-TCTKTGCACTTTTAAA (Motif 4)

A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
Reverse Opposite:
C G A T G A C T G A C T G C T A T G C A C G T A C G T A A C T G C A G T A T C G G T A C C G T A T G C A C G T A T C A G G T C A
p-value:1e-16
log p-value:-3.708e+01
Information Content per bp:1.704
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif15.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.5 +/- 20.9bp
Average Position of motif in Background54.4 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
NNATTGGACTTTNGNN
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

Tcf7/MA0769.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
CCTTTGATCTTT----
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
--BNTGDCCTTG----
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
---GTGACCTT-----
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
---CTGACCTTTG---
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
NNNGTGACCTTTGNNN
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCTKTGCACTTTTAAA
AACCCTTTGATCTTT----
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCTKTGCACTTTTAAA
NNNNTGACCTTTNNNN
 A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCTKTGCACTTTTAAA
NNGTATGTGCACATNNN--
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TCTKTGCACTTTTAAA
TGGACTTTGNNCTNTG---
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C T G T A G C G T C A A G T C A C G T A C G T A C G T C G A T C T G A C T G A C G T A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T A C G T A C G T