Information for 23-WTCAAGCTTGAAA (Motif 30)

C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
Reverse Opposite:
C G A T G A C T A C G T A T G C C G T A C T G A A C T G A G T C A C G T A C G T T A C G C G T A C G T A
p-value:1e-6
log p-value:-1.578e+01
Information Content per bp:1.841
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.2 +/- 34.8bp
Average Position of motif in Background49.6 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:WTCAAGCTTGAAA
--CAAGCTT----
 C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--WTCAAGCTTGAAA
AANTCATGCGTGAA-
 A C G T A C G T C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-WTCAAGCTTGAAA---
CGTCACGCATGACTGCA
 A C G T C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:WTCAAGCTTGAAA
---CGGTTTCAAA
 C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-WTCAAGCTTGAAA---
CGTCACGCATGACTGCA
 A C G T C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:WTCAAGCTTGAAA-------
TTTMCGCTTSABTGAACACN
 C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-WTCAAGCTTGAAA--
NGTCACGCTTGGCTGC
 A C G T C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:WTCAAGCTTGAAA
---CAGCC-----
 C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----WTCAAGCTTGAAA
GAAGATCAATCACTAA-
 A C G T A C G T A C G T A C G T C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:WTCAAGCTTGAAA--
GTCATGCHTGRCTGS
 C G A T A C G T A G T C C G T A C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A C G T A A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C