Information for 8-GCAAGCATSVCAA (Motif 7)

C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
Reverse Opposite:
A G C T G A C T C A T G A T G C T A G C C G T A C G A T A C T G G A T C G A C T A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.894e+01
Information Content per bp:1.648
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif489.2
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets54.5 +/- 28.1bp
Average Position of motif in Background47.1 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAAGCATSVCAA
-CAAGCTT-----
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAAGCATSVCAA
TBGCACGCAA-----
 A C G T A C G T C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAAGCATSVCAA
-CACGCA------
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAGCATSVCAA
CCAATCAA-----
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCAAGCATSVCAA
AAGGCGAAATCATCGCA-
 A C G T A C G T A C G T A C G T A C G T C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCAAGCATSVCAA
SCAGYCADGCATGAC--
 A C G T A C G T A C G T A C G T C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCAAGCATSVCAA
----ACATTCCA-
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAAGCATSVCAA-
ACATTCATGACACG
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCAAGCATSVCAA
GCAGCCAAGCGTGACN-
 A C G T A C G T A C G T A C G T C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

FOXP3/MA0850.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAAGCATSVCAA
GTAAACA------
 C T A G T A G C G T C A C T G A C A T G A G T C C G T A G C A T A T C G T A C G G T A C C T G A T C G A
C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T