Information for 10-TGTGCATAAAAAA (Motif 10)

A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C G T A C G T C G A T C G T A A C G T A C T G A G T C C G T A A G T C C G T A
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.936
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets26.6 +/- 22.3bp
Average Position of motif in Background51.5 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCATAAAAAA-
ATTTGCATAACAAAG
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TGTGCATAAAAAA
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATAAAAAA-
ATTTGCATAACAATG
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGTGCATAAAAAA
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCATAAAAAA-
ATTTGCATACAATGG
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCATAAAAAA
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCATAAAAAA
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGTGCATAAAAAA
ATTTGCATAA----
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCATAAAAAA
TNTAATTTGCATANNN--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTGCATAAAAAA-----
-GTTCAAAAAAAAAATTC
 A C G T C T A G A C G T A C T G A G T C C G T A A C G T G C T A G T C A C G T A C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C