Information for 6-AGACACAGGGKGG (Motif 3)

C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G
Reverse Opposite:
A T G C A G T C G T C A A G T C G T A C T G A C A C G T A C T G A C G T A C T G C A G T A G T C G C A T
p-value:1e-16
log p-value:-3.846e+01
Information Content per bp:1.742
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif28.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets59.6 +/- 17.6bp
Average Position of motif in Background47.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myc/MA0147.2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGACACAGGGKGG
AAGCACATGG---
 C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGACACAGGGKGG
AAACCACAGAN---
 A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGACACAGGGKGG------
TGGCCACCAGGTGGCACTNT
 A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGACACAGGGKGG--------
-GCCASCAGGGGGCGCYVNNG
 C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGACACAGGGKGG----
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGACACAGGGKGG-----
TGGCCACCAGGGGGCGCTA
 A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGACACAGGGKGG----
---CACAGCGGGGGGTC
 C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGACACAGGGKGG-
CACCCCCGGGGGGG
 C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGACACAGGGKGG
NWAACCACADNN---
 A C G T A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGACACAGGGKGG
NAAACCACAG-----
 A C G T A C G T C G T A C T A G G T C A G T A C G T C A A G T C G T C A A C T G C A T G C T A G C A G T A C T G A T C G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T