Information for 5-AGGCACGATG (Motif 20)

G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
Reverse Opposite:
A G T C C T G A A C G T A G T C A T C G A G C T A T C G T G A C A G T C A C G T
p-value:1e-10
log p-value:-2.456e+01
Information Content per bp:1.838
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif46.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets38.7 +/- 23.3bp
Average Position of motif in Background48.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGCACGATG-
-VRRACAAWGG
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGCACGATG
AAGGCAAGTGT
 A C G T G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGCACGATG--
---GACAATGNN
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGCACGATG
--GCACGTNC
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGCACGATG-
-GGAACAAAGR
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGCACGATG
TBGCACGCAA
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGGCACGATG
--GCACGTAY
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGCACGATG-
-GGCACGCGTC
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGCACGATG
-BGCACGTA-
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGCACGATG-
-AAAACAATGG
 G T C A C T A G A C T G A T G C C T G A A T G C C T A G G T C A G A C T A C T G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G