Information for 13-CATGTATCAT (Motif 23)

G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
Reverse Opposite:
C T G A A C G T C T A G T G C A G A C T T C G A T G A C G C T A A C G T C T A G
p-value:1e-4
log p-value:-9.603e+00
Information Content per bp:1.670
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif284.8
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets50.2 +/- 28.8bp
Average Position of motif in Background49.0 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CATGTATCAT-
AATGTATCAAT
 G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CATGTATCAT
GYCATCMATCAT
 A C G T A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

JDP2/MA0655.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CATGTATCAT
-ATGAGTCAT
 G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T

NFE2/MA0841.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CATGTATCAT-
CATGACTCATC
 G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATGTATCAT
TCATCAATCA-
 A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTATCAT
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CATGTATCAT----
TCATGAATWATTCAT
 A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T A C G T A C G T A C G T A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

JUND/MA0491.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CATGTATCAT-
NATGAGTCACN
 G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T A C G T
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTATCAT
NNTATTACATGTANNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CATGTATCAT-
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C T G C A C G A T A C T G A G C T C T G A A C G T G A T C T G C A G A C T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T