Information for 4-AKYAMAACCAAGC (Motif 4)

C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C
Reverse Opposite:
C T A G A G T C A C G T A C G T A C T G C T A G G A C T A C G T A C T G A C G T T C A G G T C A A C G T
p-value:1e-13
log p-value:-3.205e+01
Information Content per bp:1.886
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 21.9bp
Average Position of motif in Background51.9 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AKYAMAACCAAGC----
AGAAGAACAAAGGACTA
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AKYAMAACCAAGC-
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AKYAMAACCAAGC----
ATAAGAACAAAGGACTA
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AKYAMAACCAAGC-
ATATCAAAACAAAACA
 A C G T A C G T C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AKYAMAACCAAGC
ATGTCACAACAACAC
 A C G T A C G T C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AKYAMAACCAAGC
---AAAACAAAGG
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AKYAMAACCAAGC-
--ACTAGCCAATCA
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AKYAMAACCAAGC
---GGAACAAAGR
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.54
Offset:8
Orientation:forward strand
Alignment:AKYAMAACCAAGC--
--------CAAGCTT
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AKYAMAACCAAGC--
AAATGGACCAATCAG
 C G T A A C G T A G C T C G T A G T A C C G T A C T G A A G T C A G T C C G T A C G T A A C T G A G T C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G