Information for 4-AKCAGACAAGRWRTMM (Motif 13)

T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
Reverse Opposite:
C A G T C A T G T C G A A G T C G C A T G A C T T G A C C A G T A C G T C T A G A C G T T A G C G A C T C A T G G T A C A C G T
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.590
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif172.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets58.4 +/- 23.2bp
Average Position of motif in Background50.7 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AKCAGACAAGRWRTMM
CTCACACAATGGCGC-
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
----GACAATGNN---
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AKCAGACAAGRWRTMM
CGAAGCACACAAAATA---
 A C G T A C G T A C G T T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
-BCAGACWA-------
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
-NCAGATAAGAANNN-
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
NNGAGATAAGA-----
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
-----ACAAAG-----
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AKCAGACAAGRWRTMM
---AGATAAGA-----
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AKCAGACAAGRWRTMM
-ANAGATAAGAA----
 T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AKCAGACAAGRWRTMM
ATTTGCATACAATGG----
 A C G T A C G T A C G T T G C A C A T G G T A C C G T A A T C G T G C A A G T C G T C A G T C A A C T G C T G A C G T A T C A G A G C T G T A C G T A C
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T