Information for 9-TGVCATCTAG (Motif 12)

C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G
Reverse Opposite:
G T A C G C A T T C G A C T A G T G C A A C G T A C T G A C G T A G T C G T C A
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.655
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif487.6
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets46.9 +/- 25.0bp
Average Position of motif in Background50.1 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGVCATCTAG
TGTCANYT--
 C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGVCATCTAG---
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PB0125.1_Gata3_2/Jaspar

Match Rank:3
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------TGVCATCTAG----
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGVCATCTAG
TGACCYCT--
 C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGVCATCTAG----
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGVCATCTAG--
GTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGVCATCTAG--------
-NNGATCTAGAACCTNNN
 C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TGVCATCTAG----
NDBAGATRWTATCTVNNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T A C G T
C G T A C A G T A T G C C G T A A C T G C G T A A C G T T C G A G C T A G A C T C G T A A C G T A G T C C G A T T A C G G C A T A G C T G A T C G A C T G A C T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGVCATCTAG
YTGWCADY---
 A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGVCATCTAG------
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T C A G T T C A G T G C A T G A C T G C A A C G T A G T C A G C T C G T A C A T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A