Information for 6-GGAGCCAGAAAAGTCC (Motif 8)

A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
Reverse Opposite:
C A T G A C T G T G C A T A G C A C G T A C G T A C G T A C G T A G T C C A G T A C T G A C T G A T G C A C G T A G T C G T A C
p-value:1e-11
log p-value:-2.651e+01
Information Content per bp:1.775
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 21.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAGAAAAGTCC
CGGAGC-----------
 A C G T A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGAGCCAGAAAAGTCC
AGAGCCATAAAATTCG
 A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGAGCCAGAAAAGTCC
-GAGSCCGAGC-----
 A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

E2F1/MA0024.3/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAGCCAGAAAAGTCC
TTTGGCGCCAAA-------
 A C G T A C G T A C G T A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGCCAGAAAAGTCC
CGTGCCAAG-------
 A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAGAAAAGTCC
AGGTGHCAGACA-----
 A C G T A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGAGCCAGAAAAGTCC
-ATGCCAGACN-----
 A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAGAAAAGTCC
AGGTGNCAGACAG----
 A C G T A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAGAAAAGTCC
AGCTCGGCGCCAAAAGC----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGAGCCAGAAAAGTCC
--TGCCAA--------
 A C T G A C T G G T C A A T C G A G T C A G T C G T C A A C T G T G C A T C G A G T C A C G T A A T C G A C G T G T A C G A T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T