Information for 8-GCGCCACAGC (Motif 13)

A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C
Reverse Opposite:
C A T G A G T C A G C T A C T G A C G T A C T G C A T G G T A C A T C G A T G C
p-value:1e-9
log p-value:-2.089e+01
Information Content per bp:1.827
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif259.3
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets55.9 +/- 25.2bp
Average Position of motif in Background49.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GCGCCACAGC
----CACAGN
 A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GCGCCACAGC-
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

E2F1/MA0024.3/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCGCCACAGC
TTTGGCGCCAAA--
 A C G T A C G T A C G T A C G T A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCGCCACAGC-
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGCCACAGC--
--GCCACACCCA
 A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T A C G T
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCGCCACAGC
AAACCACAGC
 A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGCCACAGC-
NWAACCACADNN
 A C G T A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCGCCACAGC-
AAACCACAGAN
 A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCGCCACAGC
AGCGCGCC-----
 A C G T A C G T A C G T A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCGCCACAGC---
-GGCCACACCCAN
 A T C G A T G C C A T G G T A C G T A C T G C A A G T C C T G A C T A G G T A C A C G T A C G T A C G T
A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G