Information for 25-CGTACCAGCC (Motif 38)

A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C T G A C T G A C G T C G T A A G T C A C T G
p-value:1e-6
log p-value:-1.536e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets44.1 +/- 17.7bp
Average Position of motif in Background30.5 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTACCAGCC
-ATGCCAACC
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGTACCAGCC----
ACTATGCCAACCTACC
 A C G T A C G T A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTACCAGCC--
-GTACCCGCATN
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C A C G T A C G T
A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CGTACCAGCC
-----CAGCC
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CGTACCAGCC--
----BCAGACWA
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0094.1_Zfp128_1/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CGTACCAGCC
TCTTTGGCGTACCCTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGTACCAGCC---
-GGACCACCCACG
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

Gmeb1/MA0615.1/Jaspar

Match Rank:8
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------CGTACCAGCC
NNNTNGTACGTAANNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C A C G T

PB0027.1_Gmeb1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------CGTACCAGCC
NNNTNGTACGTAANNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGTACCAGCC--
--TTCCCGCCWG
 A G T C A C T G A C G T C G T A A G T C A G T C C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G