Information for 20-TAGTCTCAAA (Motif 26)

A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A
Reverse Opposite:
C G A T A G C T C G A T T C A G C G T A T A C G T C G A T G A C G C A T C T G A
p-value:1e-12
log p-value:-2.884e+01
Information Content per bp:1.663
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets53.1 +/- 24.1bp
Average Position of motif in Background43.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGTCTCAAA
CGGTTTCAAA
 A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAGTCTCAAA----
TAAAGTCGTAAAACGT
 A C G T A C G T A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAGTCTCAAA----
TAAAGTCGTAAAATAG
 A C G T A C G T A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAGTCTCAAA----
TAAAGTCGTAAAACAT
 A C G T A C G T A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TAGTCTCAAA--
-AGTCGTAAAAA
 A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAGTCTCAAA-----
TAAGGTCGTAAAATCCT
 A C G T A C G T A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAGTCTCAAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TAGTCTCAAA--
-GGTCGTAAAAA
 A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TAGTCTCAAA
TWGTCTGV--
 A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TAGTCTCAAA
TGGTTTCAGT
 A G C T C G T A A C T G A G C T A T G C G C A T A G T C G C T A T C G A G C T A
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T