Information for 3-GGVYCAAAGTCCR (Motif 2)

C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
Reverse Opposite:
G A C T C T A G C A T G G T C A A G T C A C G T A C G T A C G T C T A G C T A G A G T C A T G C G A T C
p-value:1e-38
log p-value:-8.944e+01
Information Content per bp:1.720
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.9 +/- 28.6bp
Average Position of motif in Background43.7 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GGVYCAAAGTCCR--
GGGGTCAAAGTCCAAT
 A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:forward strand
Alignment:GGVYCAAAGTCCR----
-GGCAAAAGTCCAATAA
 C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GGVYCAAAGTCCR
AGAGTCCAAAGTCCA
 A C G T A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---GGVYCAAAGTCCR
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGVYCAAAGTCCR
----AAAAGTCAA
 C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGVYCAAAGTCCR
TGGGGCAAAGGTCA
 A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGVYCAAAGTCCR
GGGGTCAAAGGTCA
 A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGVYCAAAGTCCR
GGGGTCAAAGGTCA
 A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGVYCAAAGTCCR
GGGGTCAAAGGTCA
 A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGVYCAAAGTCCR
GTAGGGCAAAGGTCA
 A C G T A C G T C T A G T A C G T C A G G A T C A G T C G T C A G T C A C G T A A C T G A C G T G T A C A G T C C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A