Information for 4-GCCAGCAGGTGGC (Motif 4)

T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C
Reverse Opposite:
A C T G A G T C G A T C G T C A A G T C G A T C A C G T T A C G T A G C C G A T A C T G A C T G A G T C
p-value:1e-25
log p-value:-5.870e+01
Information Content per bp:1.743
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif291.7
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets53.2 +/- 21.8bp
Average Position of motif in Background48.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GCCAGCAGGTGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC-------
GCCASCAGGGGGCGCYVNNG
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGCAGGTGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCAGGTGGC-
DCHCAGCAGGRGGCC
 A C G T T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC-
--SDGCAGGTGCNS
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCAGCAGGTGGC
CACAGCAGGGGG-
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
---AACAGATGGC
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
---NNCAGGTGNN
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C
A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

SCRT1/MA0743.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCAGCAGGTGGC-
GAGCAACAGGTGGTT
 A C G T T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCCAGCAGGTGGC
---AACAGGTGT-
 T C A G T A G C A G T C C G T A A T C G A T G C G T C A C A T G T C A G C A G T C A T G C T A G T A G C
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T