Information for 1-CAACCAATCG (Motif 1)

G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
Reverse Opposite:
A G T C T C A G C T G A A C G T A C G T C T A G A C T G A G C T G A C T C T A G
p-value:1e-14
log p-value:-3.428e+01
Information Content per bp:1.667
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif5.79%
Number of Background Sequences with motif696.9
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets53.8 +/- 25.4bp
Average Position of motif in Background51.1 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCG
ACTAGCCAATCA
 A C G T A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAACCAATCG-
-AGCCAATCGG
 G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CAACCAATCG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAACCAATCG-------
TGGACCAATCAGCACTCT
 A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAACCAATCG
-GAACAATGG
 G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCG----
AACAACCAATTAATTC
 A C G T A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAACCAATCG
CCAATCAA---
 A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAACCAATCG
-NAACAAT--
 G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAACCAATCG
VRAACAATGG
 G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATCG----
AAAAACCAATTAAGAA
 A C G T A C G T G A T C C T G A T C G A T G A C G A T C G T C A T G C A G A C T A G T C T C A G A C G T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A