Information for 3-CRRCCAATSA (Motif 2)

A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A
Reverse Opposite:
C G A T A T G C C T G A G C A T A C G T A C T G T A C G A G T C A G C T T C A G
p-value:1e-30
log p-value:-7.056e+01
Information Content per bp:1.702
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif9.55%
Number of Background Sequences with motif972.7
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets50.0 +/- 25.4bp
Average Position of motif in Background45.8 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CRRCCAATSA
ACTAGCCAATCA
 A C G T A C G T A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CRRCCAATSA-
-AGCCAATCGG
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CRRCCAATSA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CRRCCAATSA-------
TGGACCAATCAGCACTCT
 A C G T A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.79
Offset:3
Orientation:forward strand
Alignment:CRRCCAATSA-
---CCAATCAA
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CRRCCAATSA------
CGACCCAATCAACGGTG
 A C G T A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CRRCCAATSA
-TGCCAA---
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CRRCCAATSA-
---CCAATTAA
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CRRCCAATSA--
--CCCAATTAGC
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T A C G T
A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CRRCCAATSA-
---CCAATTAG
 A G T C T C G A T C A G A G T C A G T C C G T A C G T A A G C T A T C G G C T A A C G T
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G