Information for 1-GAGAGAAATCAGG (Motif 2)

A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G C G T A A G C T A C G T A G C T A G T C A C G T A G T C A G C T A G T C
p-value:1e-14
log p-value:-3.391e+01
Information Content per bp:1.931
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.6 +/- 14.7bp
Average Position of motif in Background48.9 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAAATCAGG-
TGACANARRCCAGRC
 A C G T A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAAATCAGG---
AAGGCGAAATCATCGCA
 A C G T A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAAATCAGG--
GACAGAGATATCAGTGT
 A C G T A C G T A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGAGAAATCAGG-
---TGTAAACAGGA
 A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G A C G T
A C G T A C G T A C G T C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAAATCAGG
GGCCATAAATCA--
 A C G T A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGAGAAATCAGG
----GTAAACAG-
 A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAAATCAGG
GGCCATAAATCAC-
 A C G T A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGAGAAATCAGG
GCCATAAATCA--
 A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGAGAAATCAGG
-TATGTAAACANG
 A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAGAGAAATCAGG-
----CAAATCACTG
 A C T G T C G A A C T G C G T A A C T G C T G A C G T A C T G A C G A T A G T C C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G