Information for 3-ATCCTGGCAC (Motif 9)

C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A G T C C G T A A C T G A C T G C G T A A C G T
p-value:1e-4
log p-value:-1.118e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets17.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATCCTGGCAC
--CTTGGCAA
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATCCTGGCAC-
--NTTGGCANN
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATCCTGGCAC
ACATCCTGNT--
 A C G T A C G T C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCCTGGCAC-
-NNTTGGCANN
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATCCTGGCAC
---TTGGCA-
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

GCM1/MA0646.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATCCTGGCAC
CATGCGGGTAC
 A C G T C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATCCTGGCAC--
--CCAGGAACAG
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCCTGGCAC
-GGTTGGCAT
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCCTGGCAC
-TNNGGGCAG
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ATCCTGGCAC-
-VGCTGWCAVB
 C G T A A C G T A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C