Information for 9-AGATCCATCC (Motif 25)

C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C T G A C T G C G T A A C G T A G T C A C G T
p-value:1e-3
log p-value:-7.882e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background54.0 +/- 76.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGATCCATCC
DGATCRATAN
 C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGATCCATCC
HNRAATCAAT--
 A C G T A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGATCCATCC-
GYCATCMATCAT
 A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGATCCATCC----
GAAGATCAATCACTTA
 A C G T A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGATCCATCC----
GAAGATCAATCACTAA
 A C G T A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PB0098.1_Zfp410_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGATCCATCC-------
NNNTCCATCCCATAANN
 C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGATCCATCC
AAGATATCCTT--
 A C G T A C G T A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGATCCATCC
TAATCGATAA
 C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGATCCATCC
ATAATCCC---
 A C G T C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGATCCATCC--
CCATCAATCAAA
 C G T A A C T G C G T A A C G T A G T C A G T C C G T A A C G T A G T C A G T C A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A