Information for 3-RTTKKTATKAMWT (Motif 9)

C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
Reverse Opposite:
C T G A C G T A A C T G A C G T T G C A C G T A A C G T C G T A G T C A G T C A C G T A C G T A A G C T
p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.811
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif23.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.3 +/- 26.6bp
Average Position of motif in Background50.6 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RTTKKTATKAMWT
GTNTTGTTGTGANNT
 A C G T A C G T C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:RTTKKTATKAMWT
-NTTTTATGAC--
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:RTTKKTATKAMWT
-NTTTTATTACN-
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--RTTKKTATKAMWT-
NGANTTTTATGGCTCN
 A C G T A C G T C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:RTTKKTATKAMWT
--TTTTATGGCTN
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RTTKKTATKAMWT-
TNAATTTTATTACCTN
 A C G T A C G T C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:RTTKKTATKAMWT
--TTTTATTGC--
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RTTKKTATKAMWT-
NNANTTTTATTGGNNN
 A C G T A C G T C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0172.1_Tlx2/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTTKKTATKAMWT-----
-AANTTATTAATTAATTA
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C T A G G A C T G C A T C G T A C G A T G A C T C G T A C G T A G C A T C G A T C T G A G C T A G A C T C G A T T G C A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTTKKTATKAMWT
-NTTTTATTGG--
 C T G A C G A T A C G T A C G T C A G T A C G T C G T A A C G T A C G T C G T A G T A C C G A T A G C T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T