Information for 21-YTTYTWTKASTGTCWT (Motif 29)

A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
Reverse Opposite:
C T G A C G T A C T A G C T G A G T A C C G T A A T C G G A C T T G A C G T C A C G A T C G T A T C A G C G T A C T G A T C G A
p-value:1e-9
log p-value:-2.250e+01
Information Content per bp:1.633
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif69.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets54.7 +/- 20.9bp
Average Position of motif in Background46.5 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---YTTYTWTKASTGTCWT
NGANTTTTATGGCTCN---
 A C G T A C G T A C G T A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
-TTTTATGGCTN----
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
NTTTTATTGG------
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
-TTTTATTRGN-----
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
NTTTTATGAC------
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
NTTTTATTACN-----
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---YTTYTWTKASTGTCWT
NNAATTTTATTGGNTN---
 A C G T A C G T A C G T A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
TTTTTATTGG------
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---YTTYTWTKASTGTCWT
NNANTTTTATTGGNNN---
 A C G T A C G T A C G T A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:YTTYTWTKASTGTCWT
-TTTTATTGC------
 A G C T A G C T A C G T A G T C G C A T G C T A A C G T A C T G C T G A T A G C C G A T A C T G A G C T A G T C G C A T A G C T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T