Information for 3-TAGGRATTAG (Motif 24)

C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G
Reverse Opposite:
T A G C G A C T T C G A C G T A C A G T G A T C A T G C A G T C C A G T G T C A
p-value:1e-10
log p-value:-2.395e+01
Information Content per bp:1.708
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif274.4
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets49.6 +/- 25.0bp
Average Position of motif in Background49.2 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TAGGRATTAG
-NGGGATTA-
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TAGGRATTAG-
-NNGGATTAGN
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TAGGRATTAG-
-VRGGATTARN
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TAGGRATTAG-
--GGGATTANN
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TAGGRATTAG
--RGGATTAR
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TAGGRATTAG
--GGGATTAA
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TAGGRATTAG-
-GNGGATTAGN
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TAGGRATTAG-
---GGATTAGC
 C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TAGGRATTAG-----
TGTAGGGATTAATTGTC
 A C G T A C G T C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TAGGRATTAG----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T C A G T G T C A C T A G T A C G C T A G G T C A A C G T A G C T C T G A A T C G A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T