Information for 6-TGAAAYTCAGAGCCTC (Motif 9)

C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
Reverse Opposite:
C T A G G T C A A C T G A T C G A T G C A C G T A G T C A C G T A C T G C G T A C T G A C G A T C G A T C A G T G T A C C G T A
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.758
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 8.6bp
Average Position of motif in Background33.4 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
---ACATCAAAGG---
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
---ACWTCAAAGG---
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
-AAAGATCAAAGGAA-
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGAAAYTCAGAGCCTC--
-NNTTTTCACACCTTNNN
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C A C G T A C G T
A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
---ACATCAAAGGNA-
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
---AAATCACAGCA--
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGAAAYTCAGAGCCTC
SCTGTCAVTCAV------
 A C G T A C G T C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TGAAAYTCAGAGCCTC
--NTTTTCACACCTT-
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TGAAAYTCAGAGCCTC
-----TTCACACCTT-
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGAAAYTCAGAGCCTC
-CGGTTTCAAA-----
 C G A T A C T G G C T A C G T A G C T A A G C T A C G T G T A C C G T A T A C G C G T A T A C G A T G C A G T C A C G T G A T C
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T