Information for 1-AARTTCAAGTGTA (Motif 6)

C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A
Reverse Opposite:
A C G T C G T A A G T C C G T A A G T C A C G T A C G T A C T G C G T A T G C A A G C T A C G T A G C T
p-value:1e-11
log p-value:-2.605e+01
Information Content per bp:1.797
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.5 +/- 21.2bp
Average Position of motif in Background49.3 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:AARTTCAAGTGTA
---NTCAAGTGG-
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AARTTCAAGTGTA---
AANTTCAAGTGGCTTN
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AARTTCAAGTGTA---
AAATTCAAGTGGNTTN
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AARTTCAAGTGTA---
AATTTCAAGTGGCTTN
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AARTTCAAGTGTA---
NANTTTCAAGTGGTTAN
 A C G T C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AARTTCAAGTGTA
---NTCAAGTGGN
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AARTTCAAGTGTA--
AAGTTCAAGGTCAGC
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AARTTCAAGTGTA
-AGGTCAAGGTCA
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AARTTCAAGTGTA---
AATNTTAAGTGGNTNN
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AARTTCAAGTGTA
-AGGTCAAGGTCA
 C T G A G T C A C T G A A C G T A C G T A G T C G T C A C G T A A C T G A C G T T A C G G C A T C G T A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A