Information for 3-GAATTGTRTTYCTCYT (Motif 3)

A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
Reverse Opposite:
C T G A C T G A A C T G C G T A C T A G C T A G C G T A C G T A A G C T C G T A A T G C G C T A C G T A A C G T A C G T A G T C
p-value:1e-13
log p-value:-3.058e+01
Information Content per bp:1.773
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.9 +/- 21.1bp
Average Position of motif in Background42.9 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAATTGTRTTYCTCYT
TAATTNVATTAN----
 A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G A C G T A C G T A C G T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAATTGTRTTYCTCYT
TAATTAAATTA-----
 A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAATTGTRTTYCTCYT
TAATTAAATTA-----
 A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAATTGTRTTYCTCYT
TNGAATTTCATTNAN---
 A C G T A C G T A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAATTGTRTTYCTCYT
YTAATYNRATTA-----
 A C G T A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAATTGTRTTYCTCYT
-ACTTTCGTTTCT---
 A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAATTGTRTTYCTCYT
AGAAATGACTTCCCT--
 A C G T A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GAATTGTRTTYCTCYT
--------TTCCTCT-
 A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAATTGTRTTYCTCYT
GGGAATTGTAGT------
 A C G T A C G T A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------GAATTGTRTTYCTCYT
NNNTATTGAATTGNNN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G A T A T C G G C A T C T G A A C G T A C G T A G T C G A T C A C G T A G T C A G C T G A C T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T