Information for 7-CWGAMCTRACTRG (Motif 20)

A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G
Reverse Opposite:
A T G C A G C T C G T A A C T G A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.873
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.5 +/- 22.7bp
Average Position of motif in Background67.3 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CWGAMCTRACTRG
-TGACCTARTT--
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

PH0058.1_Hoxb3/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CWGAMCTRACTRG-----
-TGAGCTAATTAGTTGGA
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CWGAMCTRACTRG
-TGACCTYA----
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CWGAMCTRACTRG----
CAAAGCTAATTAGNTTN
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T A C G T A C G T A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CWGAMCTRACTRG-----
-TAAACTAATTAGTGAAC
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CWGAMCTRACTRG----
-ACNNCTAATTAGNNNN
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T A C G T A C G T A C G T
A C G T G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PH0031.1_Evx1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CWGAMCTRACTRG-----
-AGAACTAATTAGTGGAC
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C A G G C T A T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T A T C G T A C G C G T A T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CWGAMCTRACTRG
-TGACCT------
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CWGAMCTRACTRG-
TTGACCTANTTATN
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CWGAMCTRACTRG-
----GTTAACTAGN
 A G T C C G A T A C T G G T C A G T A C A G T C A C G T C T A G C G T A A G T C A C G T C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T