Information for 12-GCAGATACTAACC (Motif 25)

A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C
Reverse Opposite:
A C T G A T C G A G C T A C G T C G T A A C T G A C G T G T C A A C G T A G T C A G C T A C T G G T A C
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.758
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.8 +/- 20.1bp
Average Position of motif in Background58.8 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCAGATACTAACC--
----NNACTTACCTN
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATACTAACC-
AGATGCTRCTRCCHT
 A C G T A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCAGATACTAACC---
GGYAGCAYDTGCTDCCCNNN
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCAGATACTAACC---
-NAGATWNBNATCTNN
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T A C G T A C G T
A C G T A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

ZEB1/MA0103.2/Jaspar

Match Rank:5
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GCAGATACTAACC--
------CCTCACCTG
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATACTAACC
AGCAGCTGCT----
 A C G T A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:GCAGATACTAACC-
--------TGACCT
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGATACTAACC
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GCAGATACTAACC
-RGGGCACTAACY
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C
A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:GCAGATACTAACC---
--------TGACCYCT
 A C T G G T A C C T G A T C A G G T C A A C G T G T C A A G T C C G A T T C G A C T G A A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T