Information for 3-TGCCATTTTG (Motif 4)

A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
Reverse Opposite:
A T G C C G T A T G C A C T G A C G T A C G A T C T A G A C T G A T G C T C G A
p-value:1e-12
log p-value:-2.856e+01
Information Content per bp:1.794
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif154.3
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets44.8 +/- 26.3bp
Average Position of motif in Background48.1 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATTTTG
GCNGCCATCTTG
 A C G T A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATTTTG
GCCGCCATCTTG
 A C G T A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGCCATTTTG----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATTTTG--
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGCCATTTTG
--CCTTTGTT
 A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCCATTTTG
TGTCANYT--
 A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATTTTG----
NNNCCATTGTGTNAN
 A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCATTTTG
GGTGCCAAGT--
 A C G T A C G T A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGCCATTTTG
--CCWTTGTY
 A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGCCATTTTG--
--CCATTGTTYB
 A C G T T A C G G T A C A G T C C G T A G C A T A G C T A C G T A C G T A T C G A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G