Information for 2-GGACTTGTAGTCC (Motif 3)

C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
Reverse Opposite:
C T A G C T A G C G T A A G T C C G A T G C T A G T A C C G T A T C G A A C T G A G C T A G T C A G T C
p-value:1e-12
log p-value:-2.948e+01
Information Content per bp:1.776
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif88.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets42.4 +/- 24.7bp
Average Position of motif in Background50.0 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTGTAGTCC
GGGAATTGTAGT--
 A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.75
Offset:-8
Orientation:reverse strand
Alignment:--------GGACTTGTAGTCC
GCMTBCTGGGAGTTGTAGTY-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------GGACTTGTAGTCC
GCATTCTGGGAATTGTAGTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGACTTGTAGTCC
VAGRACAKNCTGTBC
 A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGACTTGTAGTCC
VAGRACAKWCTGTYC
 A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGACTTGTAGTCC-
NAGNACANNNTGTNCT
 A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGACTTGTAGTCC--
AGNACAGNCTGTTCTN
 A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GGACTTGTAGTCC
GCTGACCTTGAACTN-
 A C G T A C G T A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGACTTGTAGTCC-
--NNHTGTGGTTWN
 C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C A C G T
A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

PB0032.1_IRC900814_1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GGACTTGTAGTCC--
GNNATTTGTCGTAANN
 A C G T C T A G T C A G C T G A T G A C A G C T C G A T A C T G C A G T C G T A A C T G A C G T A G T C G A T C A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T