Information for 1-AATTTYCATGGCC (Motif 3)

G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
Reverse Opposite:
T C A G A T C G T A G C G T A C C G T A C G A T A C T G T C A G C T G A T C G A C G T A A C G T C A G T
p-value:1e-10
log p-value:-2.468e+01
Information Content per bp:1.636
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif10.38%
Number of Background Sequences with motif1150.1
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets52.6 +/- 24.8bp
Average Position of motif in Background49.9 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTTYCATGGCC
BTVATTWGCATA---
 A C G T A C G T G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATTTYCATGGCC
ATTTTCCATT---
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATTTYCATGGCC
CTCATTTGCATW---
 A C G T A C G T G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATTTYCATGGCC
TTCATTTGCATAT--
 A C G T A C G T G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATTTYCATGGCC
ATTTTCCATT---
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATTTYCATGGCC
ATTTTCCATT---
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATTTYCATGGCC
-ATTTGCATA---
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AATTTYCATGGCC
ATTTTCCATT---
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C
C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATTTYCATGGCC---
--TTGCCATGGCAACN
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATTTYCATGGCC---
--TTGCCATGGCAACC
 G T C A G T C A C G A T A C G T G A C T A G T C G T A C G C T A C G A T A C T G A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C