Information for 6-GAATAAAGGCCAACCA (Motif 13)

A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G A C G T A C G T A C T G A C T G A G T C A G T C A C G T C G A T A C G T C T G A A C G T A C G T A G T C
p-value:1e-7
log p-value:-1.720e+01
Information Content per bp:1.910
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.7 +/- 22.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAATAAAGGCCAACCA-
--AAATGGACCAATCAG
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T
A C G T A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAATAAAGGCCAACCA
----ACTAGCCAATCA
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GAATAAAGGCCAACCA-
-------AGCCAATCGG
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GAATAAAGGCCAACCA
AGAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAATAAAGGCCAACCA
ATAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAATAAAGGCCAACCA
GGAACAAAGR-------
 A C G T A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAATAAAGGCCAACCA
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAATAAAGGCCAACCA
GGCAAAAGTCCAATAA
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAATAAAGGCCAACCA
GAACAATGGN------
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.56
Offset:9
Orientation:forward strand
Alignment:GAATAAAGGCCAACCA-
---------CCAATCAA
 A C T G C G T A C G T A A G C T C G T A C G T A G T C A A C T G A C T G A G T C A G T C C G T A C G T A A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A