Information for 7-RAGAMATTTAGCT (Motif 16)

C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G T A C C G A T C G T A C G T A C G T A A C G T A C T G A C G T A G T C A G C T A G T C
p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.800
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif24.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.5 +/- 25.4bp
Average Position of motif in Background56.9 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barhl1/MA0877.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RAGAMATTTAGCT
--NNCAATTANN-
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RAGAMATTTAGCT
-AAACMATTAN--
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RAGAMATTTAGCT
--ANCGTTTANN-
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RAGAMATTTAGCT---
TAAACTAATTAGCTGTA
 A C G T C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PH0045.1_Hoxa1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RAGAMATTTAGCT---
ACGGTAATTAGCTCAG
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:RAGAMATTTAGCT-
---------NGCTN
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---RAGAMATTTAGCT
NNCNNAACAATTNT--
 A C G T A C G T A C G T C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RAGAMATTTAGCT---
GGAATAATTACCTCAG
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G

Dlx1/MA0879.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RAGAMATTTAGCT
--CCTAATTATC-
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T
A C G T A C G T T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T

PH0009.1_Bsx/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RAGAMATTTAGCT---
CAGGTAATTACCTCAG
 C T A G C T G A T C A G C G T A G T A C C G T A C G A T C G A T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G