Information for 6-CCTTACGAGG (Motif 42)

A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G
Reverse Opposite:
A G T C A G T C G A C T A G T C A T C G G C A T G T C A C G T A A C T G A C T G
p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.748
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif140.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets52.8 +/- 25.2bp
Average Position of motif in Background53.7 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTTACGAGG--
CCATATATGGNA
A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTACGAGG
BNTGDCCTTG-----
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTTACGAGG
AACCTTATAT--
A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTTACGAGG--
CCTTTTATAGNC
A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTTACGAGG
TGACCTTGAN---
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTTACGAGG--
TNCCATATATGGNA
A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTTACGAGG--------
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTTACGAGG--------
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTTACGAGG
TGACCTTGAV---
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTTACGAGG---
ANATTTTACGAGNNNN
A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A T A G C C T A G C T G A C T A G C T A G A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T