Information for 6-AGGCTRRCAAAGG (Motif 24)

C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C A G T C G A T G A C T A C T G A G T C A G T C G T C A A C T G A T G C A G T C A C G T
p-value:1e-10
log p-value:-2.317e+01
Information Content per bp:1.761
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.1 +/- 16.0bp
Average Position of motif in Background55.6 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
-----AACAAAGG
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
-----RACAAWGG
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG-
----GAACAATGGN
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
---VRRACAAWGG
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGCTRRCAAAGG----
AGAAGAACAAAGGACTA
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
---VRAACAATGG
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
---GGAACAAAGR
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGGCTRRCAAAGG----
ATAAGAACAAAGGACTA
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGGCTRRCAAAGG
---AAAACAAAGG
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGCTRRCAAAGG-
----RAACAATGGN
 C G T A C T A G A T C G G T A C A C G T C T A G C T A G A G T C C G T A G C T A G C T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C