Information for 1-CACCTCKGAKSTCAGG (Motif 1)

A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G C G T A A T C G G T A C G C A T A G T C G T A C C T A G C G T A C T A G A T C G A C G T A T C G
p-value:1e-15
log p-value:-3.511e+01
Information Content per bp:1.788
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 22.9bp
Average Position of motif in Background54.3 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CACCTCKGAKSTCAGG
------AGRGGTCA--
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CACCTCKGAKSTCAGG
TGACCTTTGACCTC---
 A C G T A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CACCTCKGAKSTCAGG
--CCTTTGAWGT----
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CACCTCKGAKSTCAGG-----
----NNTNNTGTCTGGNNTNG
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CACCTCKGAKSTCAGG
TGACCTCTGACCCCN--
 A C G T A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CACCTCKGAKSTCAGG---
--NTNNNGGGGTCANGNNN
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CACCTCKGAKSTCAGG
-----CAAAGGTCAG-
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CACCTCKGAKSTCAGG
--CGTGGGTGGTCC--
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CACCTCKGAKSTCAGG--
-----CAAAGGTCAAGGG
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:CACCTCKGAKSTCAGG
--CCTTTGATGT----
 A T G C G T C A A T G C A G T C A C G T A G T C C A T G A C T G C G T A A C G T A T C G A C G T A G T C G T C A A C T G A C T G
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T