Information for 4-AAGGTGAGAAAGTAAC (Motif 16)

C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
Reverse Opposite:
A T C G G C A T G A C T G C T A G A T C G A C T A G C T A G C T A G T C A C G T A G T C G C T A A G T C G A T C G A C T A G C T
p-value:1e-7
log p-value:-1.733e+01
Information Content per bp:1.546
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.3 +/- 23.6bp
Average Position of motif in Background50.9 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBR1/MA0802.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
-AGGTGTGAAA-----
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AAGGTGAGAAAGTAAC
GAAAAGGTGTGAAAATT--
 A C G T A C G T A C G T C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
AAGGTGTGAAAAT---
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
AAGGTGTGAA------
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
AAGGTGTGAAA-----
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
AAGGTGTKAA------
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAGGTGAGAAAGTAAC
-AGGTGTTAAT-----
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
-AGGTGTGAAM-----
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
TAGGTGTGAAG-----
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGGTGAGAAAGTAAC
AAACAGACAAAGGAAT
 C T G A C T G A C T A G T C A G C G A T T C A G T G C A C T A G T C G A T C G A C T G A C T A G C G A T C T G A C G T A T A G C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T