Information for 16-GATGATTAMT (Motif 26)

A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A G T C A A C G T A G T C G T C A A C G T A G T C
p-value:1e-5
log p-value:-1.304e+01
Information Content per bp:1.907
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif20.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.7 +/- 20.6bp
Average Position of motif in Background52.9 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GATGATTAMT-
TAATGATGATCACTA
 A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GATGATTAMT--
--TGATTGATGA
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GATGATTAMT-
-ATGAATATTC
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

NFE2/MA0841.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GATGATTAMT-
GATGAGTCATN
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GATGATTAMT----
--TGATTRATGGCY
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

JDP2/MA0655.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GATGATTAMT
-ATGAGTCAT
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T
A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GATGATTAMT--
DATGASTCATNN
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T
C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GATGATTAMT---
-ATGATKGATGRC
 A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GATGATTAMT----
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GATGATTAMT----
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C G T A C G T C G T A G T A C A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C