Information for 10-CTCMYRAARCCCT (Motif 10)

A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A T C G A G T C A C G T A C G T A G C T C T G A A C G T A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.380e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.0 +/- 25.7bp
Average Position of motif in Background48.1 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCMYRAARCCCT
GCTCGTAAAAA---
 A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTCMYRAARCCCT
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTCMYRAARCCCT
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCMYRAARCCCT
CCYMATAAAA----
 A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTCMYRAARCCCT
GTCGTAAAAT---
 A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTCMYRAARCCCT
NCYAATAAAA----
 A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCMYRAARCCCT
AGTCGTAAAAA---
 A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CTCMYRAARCCCT
-----TAATCCCN
 A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTCMYRAARCCCT
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCMYRAARCCCT---
AATCGTTAATCCCTTTA
 A C G T A G T C A C G T A G T C G T C A A G C T C T G A C G T A C G T A C T A G A T G C T A G C A G T C A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C