Information for 3-TWAACACATACAAACC (Motif 7)

A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
Reverse Opposite:
A C T G C T A G A G C T C G A T C G A T C T A G A G C T C T G A C A G T A C T G C G A T A C T G G C A T A C G T C G A T C T G A
p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.766
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.6 +/- 18.2bp
Average Position of motif in Background44.4 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TWAACACATACAAACC--
-----ATATGCAAATNNN
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TWAACACATACAAACC
-----ATATGCAAAT-
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TWAACACATACAAACC
----CACATTCCAT--
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
A C G T A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TWAACACATACAAACC
-----TTATGCAAAT-
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TWAACACATACAAACC----
----ACTATGCCAACCTACC
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

TEAD4/MA0809.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TWAACACATACAAACC
----CACATTCCAT--
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
A C G T A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TWAACACATACAAACC
ATTAACACCT-------
 A C G T A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TWAACACATACAAACC
TTATTAGTACATAN-----
 A C G T A C G T A C G T A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TWAACACATACAAACC
AAAGTAAACAAAAATT----
 A C G T A C G T A C G T A C G T A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:forward strand
Alignment:TWAACACATACAAACC--
------TATGCWAATBAV
 A G C T G C T A C G T A C G T A T G A C C G T A G T A C G C T A A G C T T C G A A G T C G C T A C G T A C T G A G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G