Information for 2-AGGCTAAHTCCAAAGA (Motif 4)

C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
Reverse Opposite:
C A G T A G T C C G A T A G C T C G A T A C T G C T A G C G T A C T A G G A C T A C G T C G T A A C T G A G T C A G T C C G A T
p-value:1e-12
log p-value:-2.801e+01
Information Content per bp:1.731
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.1 +/- 24.3bp
Average Position of motif in Background46.3 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA
------ACATCAAAGG
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCF7L2/MA0523.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA--
----AAAGATCAAAGGAA
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA
------ACWTCAAAGG
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA
----AAAGATCAAAGG
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA
GGCAAAAGTCCAATAA
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTAAHTCCAAAGA
TTGGCANNNTGCCAAG-
 A C G T C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA--
------ACATCAAAGGNA
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGGCTAAHTCCAAAGA
GGGGTCAAAGTCCAAT--
 A C G T A C G T C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGGCTAAHTCCAAAGA
-GGGAATTTCC-----
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGGCTAAHTCCAAAGA
----CGGTTTCAAA--
 C G T A A C T G A C T G G T A C C G A T C G T A C G T A G A C T C G A T G A T C G T A C C G T A C T G A C G T A C T A G G T C A
A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T