Information for 14-GAGGCCATGATAT (Motif 37)

A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A G T C C G T A A C G T A C T G A C T G A G T C A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.3 +/- 13.3bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGGCCATGATAT----
ACGGCCATAAAATTAAT
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCATGATAT
TRAGGTCA------
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGGCCATGATAT
-AGGCCTNG----
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGCCATGATAT---
AGAGCCATAAAATTCG
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGGCCATGATAT
GCNGCCATCTTG-
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGGCCATGATAT
-AGGCCTAG----
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCATGATAT--
TAAGGTAATAAAATTA
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCATGATAT--
AAAGGTAATAAAATTT
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCATGATAT
AGRGGTCA------
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGGCCATGATAT
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T C G T A A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T