Information for 6-TTAAATCCAT (Motif 27)

A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T
Reverse Opposite:
T C G A C A G T C T A G A T C G G T C A A C G T A C G T G A C T G C T A T C G A
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.649
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif6.89%
Number of Background Sequences with motif1233.9
Percentage of Background Sequences with motif2.51%
Average Position of motif in Targets50.4 +/- 24.7bp
Average Position of motif in Background50.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTAAATCCAT
HNRAATCAAT
 A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

ONECUT1/MA0679.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAAATCCAT---
AAAAAATCGATAAT
 A C G T A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTAAATCCAT---
AAAAAATCGATAAT
 A C G T A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

ONECUT3/MA0757.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTAAATCCAT---
AAAAAATCAATAAT
 A C G T A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TTAAATCCAT
ATTTGAATT---
 A C G T A C G T A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTAAATCCAT---
-TAATTNVATTAN
 A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T A C G T
A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTAAATCCAT----
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTAAATCCAT--
--TAATCAATTA
 A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTAAATCCAT-
TCCAATCCACA
 A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTAAATCCAT--
--TAATCGATAA
 A G C T C G A T C T G A T G C A T G C A C A G T T A G C G A T C G T C A A G C T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A