Information for 5-TATAAAAGAG (Motif 25)

C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
Reverse Opposite:
T A G C G C A T A T G C G A C T A C G T A C G T G A C T C G T A A G C T G T C A
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.651
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif9.14%
Number of Background Sequences with motif1905.9
Percentage of Background Sequences with motif3.87%
Average Position of motif in Targets40.1 +/- 26.2bp
Average Position of motif in Background50.1 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TATAAAAGAG----
GTATAAAAGGCGGGG
 A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TATAAAAGAG----
GTATAAAAGGCGGGG
 A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TATAAAAGAG
GNCTATAAAAGG-
 A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TATAAAAGAG
NCYAATAAAA---
 A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TATAAAAGAG
NGYCATAAAWCH-
 A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TATAAAAGAG
CCYMATAAAA---
 A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TATAAAAGAG
CCAATAAAAA--
 A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TATAAAAGAG-
AAATAAGAAAAAAC
 A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TATAAAAGAG-
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TATAAAAGAG
-ATTAAA---
 C A G T T C G A G C A T C T G A T G C A T G C A C G T A T A C G C G T A A T C G
A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T