Information for 2-TCGGGGCAGCTGG (Motif 3)

A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G
Reverse Opposite:
T A G C G T A C C G T A A C T G T A G C G A C T A T C G G T A C G T A C A G T C A G T C A T C G T G C A
p-value:1e-12
log p-value:-2.914e+01
Information Content per bp:1.758
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif196.3
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets47.6 +/- 27.5bp
Average Position of motif in Background50.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myod1/MA0499.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG-
-NGNGACAGCTGCN
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T
A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Myog/MA0500.1/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TCGGGGCAGCTGG--
----GACAGCTGCAG
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCGGGGCAGCTGG-
--VNAVCAGCTGGC
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T
A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG-
--NNAGCAGCTGCT
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T
A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG--
-----GCAGCTGTNN
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:5
Orientation:forward strand
Alignment:TCGGGGCAGCTGG--
-----NCAGCTGCTG
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG---
----NVCAGCTGBBNN
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCGGGGCAGCTGG--
----AACAGCTGCAG
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG-
----AGCAGCTGCT
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCGGGGCAGCTGG----
NNNNAGCAGCTGCTGAN
 A C G T A T G C T C A G C T A G A C T G A C T G T A G C C T G A A C T G A G T C G A C T A C T G A C T G A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G